Kang H, Auzenbergs M, Clapham H, Maure C, Kim JH, Salje H, Taylor CG, Lim A, Clark A, Edmunds WJ, Sahastrabuddhe S, Brady OJ, Abbas K

Chikungunya seroprevalence, force of infection, and prevalence of chronic disability after infection in endemic and epidemic settings: a systematic review, meta-analysis, and modelling study.

Lancet Infect Dis, 2024; : . pii: S1473-3099(23)00810-1. doi: 10.1016/S1473-3099(23)00810-1
Hamins-Puértolas M, Buddhari D, Salje H, Cummings DAT, Fernandez S, Farmer A, Kaewhiran S, Khampaen D, Iamsirithaworn S, Srikiatkhachorn A, Waickman A, Thomas SJ, Rothman AL, Endy T, Rodriguez-Barraquer I, Anderson KB

Household immunity and individual risk of infection with dengue virus in a prospective, longitudinal cohort study.

Nat Microbiol, 2023; : . 10.1038/s41564-023-01543-3
Andronico A, Menudier L, Salje H, Vincent M, Paireau J, de Valk H, Gallian P, Pastorino B, Brady O, de Lamballerie X, Lazarus C, Paty MC, Vilain P, Noel H, Cauchemez S

Comparing the Performance of Three Models Incorporating Weather Data to Forecast Dengue Epidemics in Reunion Island, 2018-2019.

J Infect Dis, 2023; : . pii: jiad468. doi: 10.1093/infdis/jiad468
Salje H

Achieving zero deaths from dengue virus under evolving population immunity.

Lancet Infect Dis, 2023; : . pii: S1473-3099(23)00691-6. doi: 10.1016/S1473-3099(23)00691-6
Wang L, Huang AT, Katzelnick LC, Lefrancq N, Escoto AC, Duret L, Chowdhury N, Jarman R, Conte MA, Berry IM, Fernandez S, Klungthong C, Thaisomboonsuk B, Suntarattiwong P, Vandepitte W, Whitehead S, Cauchemez S, Cummings DAT, Salje H

Antigenic diversity and dengue disease risk.

Res Sq, 2023; : . pii: rs.3.rs-3214507. doi: 10.21203/rs.3.rs-3214507/v1
Li M, Wang W, Chen J, Zhan Z, Xu M, Liu N, Ren L, You L, Zheng W, Shi H, Zhao Z, Huang C, Chen X, Zheng N, Lu W, Zhou X, Zhou J, Liao Q, Yang J, Jit M, Salje H, Yu H

Transplacental transfer efficiency of maternal antibodies against influenza A(H1N1)pdm09 virus and dynamics of naturally acquired antibodies in Chinese children: a longitudinal, paired mother-neonate cohort study.

Lancet Microbe, 2023; : . pii: S2666-5247(23)00181-7. doi: 10.1016/S2666-5247(23)00181-7
Lim AY, Jafari Y, Caldwell JM, Clapham HE, Gaythorpe KAM, Hussain-Alkhateeb L, Johansson MA, Kraemer MUG, Maude RJ, McCormack CP, Messina JP, Mordecai EA, Rabe IB, Reiner RC Jr, Ryan SJ, Salje H, Semenza JC, Rojas DP, Brady OJ

A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk.

BMC Infect Dis, 2023; 23: 708. 10.1186/s12879-023-08717-8
Wang Z, Wu P, Wang L, Li B, Liu Y, Ge Y, Wang R, Wang L, Tan H, Wu CH, Laine M, Salje H, Song H

Marginal effects of public health measures and COVID-19 disease burden in China: A large-scale modelling study.

PLoS Comput Biol, 2023; 19: e1011492. 10.1371/journal.pcbi.1011492
Borges V, Duque MP, Martins JV, Vasconcelos P, Ferreira R, Sobral D, Pelerito A, de Carvalho IL, Núncio MS, Borrego MJ, Roemer C, Neher RA, O'Driscoll M, Rocha R, Lopo S, Neves R, Palminha P, Coelho L, Nunes A, Isidro J, Pinto M, Santos JD, Mixão V, Santos D, Duarte S, Vieira L, Martins F, Machado J, Veríssimo VC, Grau B, Peralta-Santos A, Neves J, Caldeira M, Pestana M, Fernandes C, Caria J, Pinto R, Póvoas D, Maltez F, Sá AI, Salvador MB, Teófilo E, Rocha M, Moneti V, Duque LM, E Silva FF, Baptista T, Vasconcelos J, Casanova S, Mansinho K, Alves JV, Alves J, Silva A, Alpalhão M, Brazão C, Sousa D, Filipe P, Pacheco P, Peruzzu F, de Jesus RP, Ferreira L, Mendez J, Jordão S, Duarte F, Gonçalves MJ, Pena E, Silva CN, Guimarães AR, Tavares M, Freitas G, Cordeiro R, Gomes JP

Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal.

Nat Med, 2023; : . 10.1038/s41591-023-02542-x
García-Carreras B, Hitchings MDT, Johansson MA, Biggerstaff M, Slayton RB, Healy JM, Lessler J, Quandelacy T, Salje H, Huang AT, Cummings DAT

Accounting for assay performance when estimating the temporal dynamics in SARS-CoV-2 seroprevalence in the U.S.

Nat Commun, 2023; 14: 2235. 10.1038/s41467-023-37944-5
Hawkins PA, Chochua S, Lo SW, Belman S, Antonio M, Kwambana-Adams B, von Gottberg A, du Plessis M, Cornick J, Beall B, Breiman RF, Bentley SD, McGee L, The Global Pneumococcal Sequencing Consortium

A global genomic perspective on the multidrug-resistant Streptococcus pneumoniae 15A-CC63 sub-lineage following pneumococcal conjugate vaccine introduction.

Microb Genom, 2023; 9: . 10.1099/mgen.0.000998
Sandfort M, Monteiro W, Lacerda M, Nguitragool W, Sattabongkot J, Waltmann A, Salje H, Vantaux A, Witkowski B, Robinson LJ, Mueller I, White M

The spatial signature of Plasmodium vivax and Plasmodium falciparum infections: quantifying the clustering of infections in cross-sectional surveys and cohort studies.

Malar J, 2023; 22: 75. 10.1186/s12936-023-04515-4
Lim JK, Ridde V, Agnandji ST, Lell B, Yaro S, Yang JS, Hoinard D, Weaver SC, Vanhomwegen J, Salje H, Yoon IK

Seroepidemiological Reconstruction of Long-term Chikungunya Virus Circulation in Burkina Faso and Gabon.

J Infect Dis, 2023; 227: 261-267. 10.1093/infdis/jiac246
Du Z, Wang L, Bai Y, Feng S, Ramachandran S, Lim WW, Lau EHY, Malani A, Cowling BJ

Cost effectiveness of fractional doses of COVID-19 vaccine boosters in India.

Med (N Y), 2023; 4: 182-190.e3. 10.1016/j.medj.2023.02.001
Zhanwei Du, Lin Wang, Songwei Shan, Dickson Lam, Tim K. Tsang, Jingyi Xiao, Huizhi Gao, Bingyi Yang, Sheikh Taslim Ali, Sen Pei, Isaac Chun-Hai Fung, Eric H. Y. Lau, Qiuyan Liao, Peng Wu, Lauren Ancel Meyers, Gabriel M. Leung, and Benjamin J. Cowling

Pandemic fatigue impedes mitigation of COVID-19 in Hong Kong

PNAS, 2022; 119: 48. 10.1073/pnas.2213313119
Du Z, Wang L, Pandey A, Lim WW, Chinazzi M, Piontti APY, Lau EHY, Wu P, Malani A, Cobey S, Cowling BJ

Modeling comparative cost-effectiveness of SARS-CoV-2 vaccine dose fractionation in India.

Nat Med, 2022; 28: 934-938. 10.1038/s41591-022-01736-z
Chen Y, Li N, Lourenço J, Wang L, Cazelles B, Dong L, Li B, Liu Y, Jit M, Bosse NI, Abbott S, Velayudhan R, Wilder-Smith A, Tian H, Brady OJ, CMMID COVID-19 Working Group

Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study.

Lancet Infect Dis, 2022; 22: 657-667. 10.1016/S1473-3099(22)00025-1
Quandelacy TM, Hitchings MDT, Lessler J, Read JM, Vukotich C, Azman AS, Salje H, Zimmer S, Gao H, Zheteyeva Y, Uzicanin A, Cummings DAT

Household transmission dynamics of seasonal human coronaviruses.

J Infect Dis, 2022; : . 10.1093/infdis/jiac436
Ribeiro Dos Santos G, Durovni B, Saraceni V, Souza Riback TI, Pinto SB, Anders KL, Moreira LA, Salje H

Estimating the effect of the wMel release programme on the incidence of dengue and chikungunya in Rio de Janeiro, Brazil: a spatiotemporal modelling study.

Lancet Infect Dis, 2022; 22: 1587-1595. 10.1016/S1473-3099(22)00436-4
Reich NG, Lauer SA, Sakrejda K, Iamsirithaworn S, Hinjoy S, Suangtho P, Suthachana S, Clapham HE, Salje H, Cummings DAT, Lessler J

Correction: Challenges in Real-Time Prediction of Infectious Disease: A Case Study of Dengue in Thailand.

PLoS Negl Trop Dis, 2022; 16: e0010883. 10.1371/journal.pntd.0010883
Wiens KE, Jauregui B, Arnold BF, Banke K, Wade D, Hayford K, Costero-Saint Denis A, Hall RH, Salje H, Rodriguez-Barraquer I, Azman AS, Vernet G, Leung DT, Collaboration on Integrated Biomarkers Surveillance

Building an integrated serosurveillance platform to inform public health interventions: Insights from an experts' meeting on serum biomarkers.

PLoS Negl Trop Dis, 2022; 16: e0010657. 10.1371/journal.pntd.0010657
Christofferson RC, Wearing HJ, Turner EA, Walsh CS, Salje H, Tran-Kiem C, Cauchemez S

How do i bite thee? let me count the ways: Exploring the implications of individual biting habits of Aedes aegypti for dengue transmission.

PLoS Negl Trop Dis, 2022; 16: e0010818. 10.1371/journal.pntd.0010818
Nemoto T, Aubry M, Teissier Y, Paul R, Cao-Lormeau VM, Salje H, Cauchemez S

Reconstructing long-term dengue virus immunity in French Polynesia.

PLoS Negl Trop Dis, 2022; 16: e0010367. 10.1371/journal.pntd.0010367
Paireau J, Guillot S, Aït El Belghiti F, Matczak S, Trombert-Paolantoni S, Jacomo V, Taha MK, Salje H, Brisse S, Lévy-Bruhl D, Cauchemez S, Toubiana J

Effect of change in vaccine schedule on pertussis epidemiology in France: a modelling and serological study.

Lancet Infect Dis, 2022; 22: 265-273. 10.1016/S1473-3099(21)00267-X
Zhanwei Du, Caifen Liu, Chunyu Wang, Lingfeng Xu, Mingda Xu, Lin Wang, Yuan Bai, Xiaoke Xu, Eric H. Y. Lau, Peng Wu and Benjamin J. Cowling.

Reproduction Numbers of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants: A Systematic Review and Meta-analysis

Clinical Infectious Diseases, 2022; : . https://doi.org/10.1093/cid/ciac137
Bernardo Garcı´a-Carreras, Bingyi Yang, Mary K. Grabowski, Lawrence W. Sheppard, Angkana T. Huang, Henrik Salje, Hannah Eleanor Clapham, Sopon Iamsirithaworn, Pawinee Doung-Ngern, Justin Lessler and Derek A.T. Cummings.

Periodic synchronisation of dengue epidemics in Thailand over the last 5 decades driven by temperature and immunity

PLOS Biology, 2022; : . https://doi.org/10.1371/journal. pbio.3001160
Leah C. Katzelnick, Ana Coello Escoto, Angkana T. Huang, Bernardo Garcia-Carreras, ,Nayeem Chowdhury, Irina Maljkovic Berry, Chris Chavez, Philippe Buchy, Veasna Duong, Philippe Dussart, Gregory Gromowski, Louis Macareo, Butsaya Thaisomboonsuk, Stefan Fernandez, Derek J. Smith, Richard Jarman, Stephen S. Whitehead,Henrik Salje, Derek A. T. Cummings.

Antigenic evolution of dengue viruses over 20 years

Science, 2022; 374: . DOI: 10.1126/science.abk0058
Angkana T. Huang, Henrik Salje, Ana Coello Escoto, Nayeem Chowdhury, Christian Chávez, Bernardo Garcia-Carreras, Wiriya Rutvisuttinunt, Irina Maljkovic Berry, Gregory D. Gromowski, Lin Wang, Chonticha Klungthong, Butsaya Thaisomboonsuk, Ananda Nisalak, Luke M. Trimmer-Smith, Isabel Rodriguez-Barraquer, Damon W. Ellison, Anthony R. Jones, Stefan Fernandez, Stephen J. Thomas,Derek J. Smith, Richard Jarman, Stephen S. Whitehead, Derek A. T. Cummings, Leah C. Katzelnick.

Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand

PLOS Pathogens, 2022; : . https://doi.org/10.1371/journal.ppat.1010500
Gabriel Ribeiro Dos Santos, Darunee Buddhari, Sopon Iamsirithaworn, Direk Khampaen, Alongkot Ponlawat, Thanyalak Fansiri, Aaron Farmer, Stefan Fernandez, Stephen Thomas, Isabel Rodriguez Barraquer, Anon Srikiatkhachorn, Angkana T Huang, Derek A T Cummings, Timothy Endy, Alan L Rothman, Henrik Salje, Kathryn Anderson.

Individual, household and community drivers of dengue virus infection risk in Kamphaeng Phet province, Thailand

The Journal of Infectious Diseases, 2022; : . https://doi.org/10.1093/infdis/jiac177
Jessica E. Metcalf, Juliette Paireau, Megan O’Driscoll, Mathilde Pivette, Bruno Hubert, Isabelle Pontais, Sema Nickbakhsh, Derek A. T. Cummings, Simon Cauchemez and Henrik Salje

Comparing the age and sextrajectories of SARS-CoV-2morbidity and mortality withother respiratory pathogens

Royal Society Open Science, 2022; : . https://doi.org/10.6084/m9.figshare.c.
Jacqueline Kyungah Lim, Valery Ridde, Selidji Todagbe Agnandji, Bertrand Lell, Seydou Yaro , Jae Seung Yang, Damien Hoinard, Scott C. Weaver, Jessica Vanhomwegen, Henrik Salje, and In-Kyu Yoon.

Seroepidemiological Reconstruction of Long-term Chikungunya Virus Circulation in Burkina Faso and Gabon

The Journal of Infectious Diseases, 2022; : . https://doi.org/10.1093/infdis/jiac246
Gabriel Ribeiro dos Santos, Betina Durovni, Valeria Saraceni, Thais Irene Souza Riback, Sofia B. Pinto, Katherine L. Anders, Luciano A. Moreira, View ORCID ProfileHenrik Salje

Estimating the impact of the wMel release program on dengue and chikungunya incidence in Rio de Janeiro, Brazil.

The Lancet Infectious Diseases, 2022; : . https://doi.org/10.17863/CAM.87380
Noémie Lefrancq, Valérie Bouchez, Nadia Fernandes, Alex-Mikael Barkoff, Thijs Bosch, Tine Dalby, Thomas Åkerlund, Jessica Darenberg, Katerina Fabianova, Didrik F. Vestrheim, Norman K. Fry, Juan José González-López, Karolina Gullsby, Adele Habington, Qiushui He,17, David Litt, Helena Martini, Denis Piérard, Paola Stefanelli, Marc Stegger, Jana Zavadilova, Nathalie Armatys, Annie Landier, Sophie Guillot, Samuel L. Hong, Philippe Lemey, Julian Parkhill, Julie Toubiana, Simon Cauchemez, Henrik Salje and Sylvain Brisse.

Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis

Science Translational Medicine, 2022; : . https://doi.org/10.17863/CAM.82478
Zhanwei Du, Caifen Liu, Chunyu Wang, Lingfeng Xu, Mingda Xu, Lin Wang, Yuan Bai, Xiaoke Xu, Eric H Y Lau, Peng Wu and Benjamin J Cowling

Reproduction Numbers of SARS-CoV-2 Variants: A Systematic Review and Meta-analysis

Clinical Infectious Diseases, 2022; : . 10.1093/cid/ciac137
Sophie Belman, Chrispin Chaguza, Narender Kumar, Stephanie Lo and Stephen D. Bentley

A new perspective on ancient Mitis group streptococcal genetics

Microbial Genomics, 2022; : . 10.1099/mgen.0.000753
Paolo Bosetti, Bich-Tram Huynh, Armiya Youssouf Abdou, Marie Sanchez, Catherine Eisenhauer, Noémie Courtejoie, Jérôme Accardo, Henrik Salje, Didier Guillemot, Mathieu Moslonka-Lefebvre, Pierre-Yves Boëlle, Guillaume Béraud, Simon Cauchemez and Lulla Opatowski

Lockdown impact on age-specific contact patterns and behaviours, France, April 2020

Eurosurveillance, 2021; : . 10.2807/1560-7917.ES.2021.26.48.2001636
Sarah Bailly, Dominique Rousset, Camille Fritzell, Nathanaël Hozé, Sarrah Ben Achour, Léna Berthelot, Antoine Enfissi, Jessica Vanhomwegen, Henrik Salje, Sandrine Fernandes-Pellerin, Mona Saout, Anne Lavergne, Jean-Claude Manuguerra, Jean-François Carod, Félix Djossou, Simon Cauchemez and Claude Flamand.

Spatial Distribution and Burden of Emerging Arboviruses in French Guiana

Viruses, 2021; : . 10.3390/v13071299
Jessica Clark, Wilma A. Stolk, María-Gloria Basáñez, Luc E. Coffeng, Zulma M. Cucunubá, Matthew A. Dixon, Louise Dyson, Katie Hampson, Michael Marks, Graham F. Medley, Timothy M. Pollington, Joaquin M. Prada, Kat S. Rock, Henrik Salje, Jaspreet Toor and T. Déirdre Hollingsworth.

How modelling can help steer the course set by the World Health Organization 2021-2030 roadmap on neglected tropical diseases

Gates Open Research, 2021; : . 10.12688/gatesopenres.13327.1
Henrik Salje , Maria Theresa Alera, Mary Noreen Chua, Taweewun Hunsawong, Damon Ellison, Anon Srikiatkhachorn, Richard G. Jarman , Gregory D. Gromowski, Isabel Rodriguez-Barraquer, Simon Cauchemez , Derek A. T. Cummings, Louis Macareo, In-Kyu Yoon, Stefan Fernandez and Alan L. Rothman.

Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection

Nature Medicine, 2021; : . 10.1038/s41591-021-01392-9
Birgit Nikolay, Gabriel Ribeiro dos Santos, Marc Lipsitch, Mahmudur Rahman, Stephen P.Luby, Henrik Salje, Emily S.Gurley and Simon Cauchemeza.

Assessing the feasibility of Nipah vaccine efficacy trials based on previous outbreaks in Bangladesh

Vaccine, 2021; : . 10.1016/j.vaccine.2021.08.027

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